AMEX60DD053753 protein (axolotl) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMEX60DD053753

PPP2R1B (590 aa)

Predicted Functional Partners:

AMEX60DD012226

0.841

AMEX60DDU001011882

0.841

AMEX60DD050329

0.773

AMEX60DD012192

0.751

AMEX60DD024724

0.751

AMEX60DD052708

0.742

AMEX60DD055274

0.739

AMEX60DD049804

0.734

AMEX60DD001767

0.733

AMEX60DD025265

0.732

Your Current Organism:

axolotl

STRING proteome Id: STRG0A90SNX

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AMEX60DD001767	AMEX60DD012192	PDCD10\|AMEX60DD201001767.3	STRN3\|AMEX60DD301012192.1	0.854
AMEX60DD001767	AMEX60DD024724	PDCD10\|AMEX60DD201001767.3	STRN4\|AMEX60DD301024724.1	0.854
AMEX60DD001767	AMEX60DD049804	PDCD10\|AMEX60DD201001767.3	PPME1\|AMEX60DD201049804.1	0.515
AMEX60DD001767	AMEX60DD053753	PDCD10\|AMEX60DD201001767.3	PPP2R1B	0.733
AMEX60DD001767	AMEX60DD055274	PDCD10\|AMEX60DD201001767.3	LOC101799563	0.999
AMEX60DD012192	AMEX60DD001767	STRN3\|AMEX60DD301012192.1	PDCD10\|AMEX60DD201001767.3	0.854
AMEX60DD012192	AMEX60DD025265	STRN3\|AMEX60DD301012192.1	PPP2R5B\|AMEX60DD301025265.3	0.529
AMEX60DD012192	AMEX60DD053753	STRN3\|AMEX60DD301012192.1	PPP2R1B	0.751
AMEX60DD012192	AMEX60DD055274	STRN3\|AMEX60DD301012192.1	LOC101799563	0.957
AMEX60DD012226	AMEX60DD025265	PPP2R3C\|AMEX60DD201012226.1	PPP2R5B\|AMEX60DD301025265.3	0.896
AMEX60DD012226	AMEX60DD052708	PPP2R3C\|AMEX60DD201012226.1	PPP2R2D\|AMEX60DD301052708.1	0.736
AMEX60DD012226	AMEX60DD053753	PPP2R3C\|AMEX60DD201012226.1	PPP2R1B	0.841
AMEX60DD024724	AMEX60DD001767	STRN4\|AMEX60DD301024724.1	PDCD10\|AMEX60DD201001767.3	0.854
AMEX60DD024724	AMEX60DD025265	STRN4\|AMEX60DD301024724.1	PPP2R5B\|AMEX60DD301025265.3	0.529
AMEX60DD024724	AMEX60DD053753	STRN4\|AMEX60DD301024724.1	PPP2R1B	0.751
AMEX60DD024724	AMEX60DD055274	STRN4\|AMEX60DD301024724.1	LOC101799563	0.957
AMEX60DD025265	AMEX60DD012192	PPP2R5B\|AMEX60DD301025265.3	STRN3\|AMEX60DD301012192.1	0.529
AMEX60DD025265	AMEX60DD012226	PPP2R5B\|AMEX60DD301025265.3	PPP2R3C\|AMEX60DD201012226.1	0.896
AMEX60DD025265	AMEX60DD024724	PPP2R5B\|AMEX60DD301025265.3	STRN4\|AMEX60DD301024724.1	0.529
AMEX60DD025265	AMEX60DD049804	PPP2R5B\|AMEX60DD301025265.3	PPME1\|AMEX60DD201049804.1	0.796