AMEX60DD039080 protein (axolotl) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMEX60DD039080

HSBP1L1|AMEX60DD201039080.1 (79 aa)

Predicted Functional Partners:

AMEX60DD008404

0.926

AMEX60DD030005

0.833

AMEX60DD001144

0.816

AMEX60DD053749

0.771

AMEX60DD017799

0.756

AMEX60DD036971

0.756

AMEX60DD040819

0.756

AMEX60DD028834

0.702

AMEX60DD006886

0.664

AMEX60DD025332

0.663

Your Current Organism:

axolotl

STRING proteome Id: STRG0A90SNX

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AMEX60DD001144	AMEX60DD017799	HSPB8\|AMEX60DD301001144.1	HSF4	0.736
AMEX60DD001144	AMEX60DD028834	HSPB8\|AMEX60DD301001144.1	HSPA4\|AMEX60DD201028834.1	0.986
AMEX60DD001144	AMEX60DD036971	HSPB8\|AMEX60DD301001144.1	LOC115474338	0.736
AMEX60DD001144	AMEX60DD039080	HSPB8\|AMEX60DD301001144.1	HSBP1L1\|AMEX60DD201039080.1	0.816
AMEX60DD001144	AMEX60DD040819	HSPB8\|AMEX60DD301001144.1	HSF1\|AMEX60DD301040819.2	0.736
AMEX60DD001144	AMEX60DD053749	HSPB8\|AMEX60DD301001144.1	CRYAB\|AMEX60DD201053749.2	0.978
AMEX60DD006886	AMEX60DD008404	DR999_PMT17150	WASHC3\|AMEX60DD301008404.3	0.999
AMEX60DD006886	AMEX60DD017799	DR999_PMT17150	HSF4	0.505
AMEX60DD006886	AMEX60DD036971	DR999_PMT17150	LOC115474338	0.505
AMEX60DD006886	AMEX60DD039080	DR999_PMT17150	HSBP1L1\|AMEX60DD201039080.1	0.664
AMEX60DD006886	AMEX60DD040819	DR999_PMT17150	HSF1\|AMEX60DD301040819.2	0.505
AMEX60DD008404	AMEX60DD006886	WASHC3\|AMEX60DD301008404.3	DR999_PMT17150	0.999
AMEX60DD008404	AMEX60DD017799	WASHC3\|AMEX60DD301008404.3	HSF4	0.580
AMEX60DD008404	AMEX60DD030005	WASHC3\|AMEX60DD301008404.3	ATG101\|AMEX60DD201030005.1	0.870
AMEX60DD008404	AMEX60DD036971	WASHC3\|AMEX60DD301008404.3	LOC115474338	0.580
AMEX60DD008404	AMEX60DD039080	WASHC3\|AMEX60DD301008404.3	HSBP1L1\|AMEX60DD201039080.1	0.926
AMEX60DD008404	AMEX60DD040819	WASHC3\|AMEX60DD301008404.3	HSF1\|AMEX60DD301040819.2	0.580
AMEX60DD017799	AMEX60DD001144	HSF4	HSPB8\|AMEX60DD301001144.1	0.736
AMEX60DD017799	AMEX60DD006886	HSF4	DR999_PMT17150	0.505
AMEX60DD017799	AMEX60DD008404	HSF4	WASHC3\|AMEX60DD301008404.3	0.580