Cs_ont_3g001050.2 protein (C.sinensis_DHSO_v3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Cs_ont_3g001050.2

Text annotation not provided. (244 aa)

Predicted Functional Partners:

Cs_ont_7g007460.1

0.979

Cs_ont_5g000230.1

0.962

Cs_ont_5g000230.2

0.962

Cs_ont_1g018130.2

0.954

Cs_ont_1g018130.1

0.935

Cs_ont_6g024010.1

0.935

Cs_ont_6g024010.2

0.935

Cs_ont_7g028570.1

0.935

Cs_ont_2g010250.1

0.873

Cs_ont_3g026180.1

0.516

Your Current Organism:

C.sinensis_DHSO_v3

STRING proteome Id: STRG0A34EFH

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Cs_ont_1g018130.1	Cs_ont_1g018130.2	Text annotation not provided.	Text annotation not provided.	0.860
Cs_ont_1g018130.1	Cs_ont_2g010250.1	Text annotation not provided.	Text annotation not provided.	0.830
Cs_ont_1g018130.1	Cs_ont_3g001050.2	Text annotation not provided.	Text annotation not provided.	0.935
Cs_ont_1g018130.1	Cs_ont_3g026180.1	Text annotation not provided.	Text annotation not provided.	0.735
Cs_ont_1g018130.1	Cs_ont_5g000230.1	Text annotation not provided.	Text annotation not provided.	0.785
Cs_ont_1g018130.1	Cs_ont_5g000230.2	Text annotation not provided.	Text annotation not provided.	0.785
Cs_ont_1g018130.1	Cs_ont_6g024010.1	Text annotation not provided.	Text annotation not provided.	0.835
Cs_ont_1g018130.1	Cs_ont_6g024010.2	Text annotation not provided.	Text annotation not provided.	0.835
Cs_ont_1g018130.2	Cs_ont_1g018130.1	Text annotation not provided.	Text annotation not provided.	0.860
Cs_ont_1g018130.2	Cs_ont_2g010250.1	Text annotation not provided.	Text annotation not provided.	0.830
Cs_ont_1g018130.2	Cs_ont_3g001050.2	Text annotation not provided.	Text annotation not provided.	0.954
Cs_ont_1g018130.2	Cs_ont_3g026180.1	Text annotation not provided.	Text annotation not provided.	0.800
Cs_ont_1g018130.2	Cs_ont_5g000230.1	Text annotation not provided.	Text annotation not provided.	0.785
Cs_ont_1g018130.2	Cs_ont_5g000230.2	Text annotation not provided.	Text annotation not provided.	0.785
Cs_ont_1g018130.2	Cs_ont_6g024010.1	Text annotation not provided.	Text annotation not provided.	0.860
Cs_ont_1g018130.2	Cs_ont_6g024010.2	Text annotation not provided.	Text annotation not provided.	0.860
Cs_ont_1g018130.2	Cs_ont_7g028570.1	Text annotation not provided.	Text annotation not provided.	0.860
Cs_ont_2g010250.1	Cs_ont_1g018130.1	Text annotation not provided.	Text annotation not provided.	0.830
Cs_ont_2g010250.1	Cs_ont_1g018130.2	Text annotation not provided.	Text annotation not provided.	0.830
Cs_ont_2g010250.1	Cs_ont_3g001050.2	Text annotation not provided.	Text annotation not provided.	0.873